TCR CoM : TCR complex geometrical parameters

Calculates the geometrical parameters (r, theta, phi) of T cell receptors (TCR) on the top of MHC proteins

Upload TCR complex PDB file:

Select MHC class: ClassI ClassII

   MHC alpha chain:

   TCR alpha chain:

   TCR beta chain:

   MHC alpha chain:

   MHC beta chain:

   TCR alpha chain:

   TCR beta chain:

Example outputs:
ClassI MHC-peptide TCR complex 1AO7
ClassII MHC-peptide TCR complex 1FYT

For more information: TCR complex geometrical parameters

TCR CoM: Source code and Pymol plugin

Citation:
Singh, NK, Abualrous, ET, Ayres, CM, et al. Geometrical characterization of T cell receptor binding modes reveals class‐specific binding to maximize access to antigen. Proteins. 2019; 1– 11. https://doi.org/10.1002/prot.25829